PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg08087g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 160aa    MW: 18635.1 Da    PI: 9.1318
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg08087g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.75.4e-112314427128
                       NAM  27 kleleevikevdiykvePwdLpk......kvkaeekew......yfFskrdkkyatgkrknra..tksgyWkatgkdkevlsk.. 95 
                               +l+ + +i+ +d+yk ePw   +           e++w      yf ++r+k+   + r  r+   + g Wk++ k+k+v+ k  
  Niben101Ctg08087g00001.1  23 ELHDNGFIAMCDVYKQEPWVTYShghstgG---VEDNWdtsiyrYFITPRKKN---KGRFCRTvgKRGGSWKQQDKEKAVTIKsc 101
                               445556799**********99633443331...22233334433555555443...4567774124589************9977 PP

                       NAM  96 ....kgel..vglkktLvfykgrapkge......ktdWvmheyrl 128
                                   +  +  +g  k++ + ++++ k          +W+m+ey l
  Niben101Ctg08087g00001.1 102 dqrkR--DliIGRMKSMCYTEKNNTKCInsddynDGKWLMKEYVL 144
                               65433..156**********76555544222232778******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.3591160IPR003441NAC domain
SuperFamilySSF1019414.71E-1125151IPR003441NAC domain
PfamPF023651.9E-739144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MILEKGIISS DGFGVSEISF KQELHDNGFI AMCDVYKQEP WVTYSHGHST GGVEDNWDTS  60
IYRYFITPRK KNKGRFCRTV GKRGGSWKQQ DKEKAVTIKS CDQRKRDLII GRMKSMCYTE  120
KNNTKCINSD DYNDGKWLMK EYVLSDPILN KFSNSERKDY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622624.17e-94PREDICTED: uncharacterized protein LOC104113990
TrEMBLA0A1J6IJZ53e-94A0A1J6IJZ5_NICAT; Uncharacterized protein
STRINGXP_009622624.13e-93(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1500848