PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Ctg09867g00003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CPP

Protein Properties

Length: 198aa MW: 21623.1 Da PI: 8.2635

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Ctg09867g00003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	53.7	4e-17	2	40	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN Niben101Ctg09867g00003.1 2 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 40 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	20.207	1	42	IPR005172	CRC domain
SMART	SM01114	7.5E-18	2	43	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.2E-12	4	40	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
ARHKRGCNCK KSGCLKKYCE CYQGGVGCSI NCRCEGCKNA FGRKDGSINI GTDGDAEEEE 60 TDSYEKSIVD RTSHKNLVQS DIEQNPDSAH PATPLSFGRP PMQLPFSLKN KPPRSSFLSI 120 GSSSGGIYAA GQEVGRPNFF QPQPKFDKPF ESVQVQEDEM PEILQGTKSP VSGIRTASPN 180 RKRVSPPHCN YGNSHSHS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269\|PubMed:10769244, ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:9043081, ECO:0000269\|PubMed:9725857}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009770238.1	1e-124	PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
Swissprot	Q9LUI3	1e-45	TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBL	A0A1U7VV37	1e-122	A0A1U7VV37_NICSY; protein tesmin/TSO1-like CXC 2 isoform X1
STRING	XP_009770238.1	1e-123	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2467	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	3e-40	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Lu T,Dou Y,Zhang C Fuzzy clustering of CPP family in plants with evolution and interaction analyses. BMC Bioinformatics, 2013. 14 Suppl 13: p. S10 [PMID:24268301] Xie W, et al. Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach. Front Plant Sci, 2015. 6: p. 829 [PMID:26528302] Wang W,Sijacic P,Xu P,Lian H,Liu Z Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054 [PMID:29535223]