PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Ctg10874g00003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SAP

Protein Properties

Length: 207aa MW: 23924.8 Da PI: 6.9274

Description

SAP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Ctg10874g00003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SAP	352.5	6.9e-108	1	207	79	283
SAP 79 vcstwravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvded....ndadalsCrclals 159 vcstw+avs sdllwq+ltrriW+r +llr+tWree+iy+h+ta+nf + ry+y tl+f pa++d+d n++d+l Cr+lals Niben101Ctg10874g00003.1 1 VCSTWQAVSHSDLLWQNLTRRIWNRHYLLRQTWREEFIYWHQTANNFLHHRYTYNTLHFVPANNDNDdnnnNNIDSLFCRRLALS 85 8**********************************************************987654222156789***** PP SAP 160 dkylaaGfadGavrlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvnd 244 d++laaGf+dG+v+lf l trlh+stf+p+hrdrlGrfsravsGi++sd +lvfa+ldGdihv vi aa++rra+lGdvvnd Niben101Ctg10874g00003.1 86 DHHLAAGFSDGSVQLFYLPTRLHLSTFHPHHRDRLGRFSRAVSGIILSDVQLVFASLDGDIHVVVIGD--AAPPRRAHLGDVVND 168 **************************************************************98..78********* PP SAP 245 GalvdfaGsgrWwvGlyaGvpGrafhiWdaeteelvfvG 283 Galvdf+G+++WwvGlyaGvpGrafhiW+ eteel fvG Niben101Ctg10874g00003.1 169 GALVDFTGCDQWWVGLYAGVPGRAFHIWNKETEELLFVG 207 ************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.1280.50	2.7E-4	1	50	No hit	No description
SuperFamily	SSF50978	1.23E-6	52	170	IPR017986	WD40-repeat-containing domain
Gene3D	G3DSA:2.130.10.10	4.2E-4	81	149	IPR015943	WD40/YVTN repeat-like-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
VCSTWQAVSH SDLLWQNLTR RIWNRHYLLR QTWREEFIYW HQTANNFLHH RYTYNTLHFV 60 PANNDNDDNN NNNIDSLFCR RLALSDHHLA AGFSDGSVQL FYLPTRLHLS TFHPHHRDRL 120 GRFSRAVSGI ILSDVQLVFA SLDGDIHVVV IGDAAPPRRA HLGDVVNDGA LVDFTGCDQW 180 WVGLYAGVPG RAFHIWNKET EELLFVG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019244733.1	1e-148	PREDICTED: transcriptional regulator STERILE APETALA-like
Swissprot	Q9FKH1	1e-79	SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBL	A0A1J6J4Z5	1e-147	A0A1J6J4Z5_NICAT; Transcriptional regulator sterile apetala
STRING	XP_009793043.1	1e-135	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4099	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35770.1	2e-80	SAP family protein

Publications ? help Back to Top
Li N, et al. STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana. PLoS Genet., 2018. 14(2): p. e1007218 [PMID:29401459]