PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Ctg12776g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 267aa MW: 30000.7 Da PI: 9.5562

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Ctg12776g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.5	1.1e-08	174	214	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR++i +++ L++++P K++ a++L +A +Y+k L Niben101Ctg12776g00001.1 174 ARQRREKISEKIKILQKMVPGG-----SKMDTASMLDEAANYLKFL 214 69****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.021	165	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-13	170	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-12	171	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.69E-9	171	219	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-12	173	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.6E-6	174	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MIFSDDSKSL WNTNNDNFAD SSGESAIDAF NSKPIDVNDS NNIECPVNET DQHNNPIRSS 60 EVKRHMTKRR YNRALLQRAD SSTRDSGFQL ISEIQPKSKK PRSENKLPNS ANQQSSSSAS 120 SADDEPDLEA IAQMKEMIYC AAAFRPVSFG TEAEAKKPKR KNVRISTDPQ TVAARQRREK 180 ISEKIKILQK MVPGGSKMDT ASMLDEAANY LKFLRSRIKA MEAFGHKIDP LIMTNISSLS 240 SIPFNYPFSM QPHIPLQLDN PVQRPYS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019231638.1	1e-166	PREDICTED: transcription factor bHLH87-like isoform X1
Refseq	XP_019231639.1	1e-167	PREDICTED: transcription factor bHLH87-like isoform X2
Swissprot	Q8S3D2	2e-60	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A314KH75	1e-165	A0A314KH75_NICAT; Transcription factor bhlh87
STRING	XP_009790621.1	1e-150	(Nicotiana sylvestris)
STRING	XP_009625228.1	1e-151	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4350	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	6e-60	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]