PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Ctg13932g00004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 193aa MW: 21578.4 Da PI: 5.8351

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Ctg13932g00004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	66.8	4.2e-21	44	192	161	324
GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe 245 ++L fA+++++++++n + l++l+ + ++ +++E l+++ +l+lh+l ++s + + sl+Pk vv++e++ Niben101Ctg13932g00004.1 44 FSSQLLAFAKAININLQINRMENYPLQNLDSQVINSSSDEILVICAQLRLHNLKHNSPDERT----------SLEPKGVVLSENN 118 56899*************8777*************************966666665..........9******** PP GRAS 246 adh..ns.esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324 +d+ ns ++F+++f++ +ey ++++ds+++ + + r Er++++ e+ +++++ g++ +e++ekW er++++GF Niben101Ctg13932g00004.1 119 MDCscNScGDFATGFARQVEYLWKFLDSISVAY----KGREGAERRMMEGEAAKALTNMGEM----NERKEKWCERMQTVGF 192 8875444259***************9995....89999999999*********9....88888********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	12.994	1	193	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-18	44	192	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MANVARGVDP SIRRAATIGS SNSYIENDQL RNSPFVIGPA GYNFSSQLLA FAKAININLQ 60 INRMENYPLQ NLDSQVINSS SDEILVICAQ LRLHNLKHNS PDERTSLEPK GVVLSENNMD 120 CSCNSCGDFA TGFARQVEYL WKFLDSISVA YKGREGAERR MMEGEAAKAL TNMGEMNERK 180 EKWCERMQTV GFV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269\|PubMed:15961669, ECO:0000269\|PubMed:23077241}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269\|PubMed:15961669}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009594760.1	1e-108	PREDICTED: nodulation-signaling pathway 1 protein-like
Refseq	XP_016457577.1	1e-108	PREDICTED: nodulation-signaling pathway 1 protein-like
Swissprot	Q4VYC8	3e-79	NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBL	A0A1S3Z0D8	1e-106	A0A1S3Z0D8_TOBAC; nodulation-signaling pathway 1 protein-like
STRING	XP_009594760.1	1e-107	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4949	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13840.1	4e-45	GRAS family protein

Publications ? help Back to Top
Cerri MR, et al. Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection. Plant Physiol., 2012. 160(4): p. 2155-72 [PMID:23077241] Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513]