PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg13994g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 202aa    MW: 22185.1 Da    PI: 10.7789
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg13994g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-19144194155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  Niben101Ctg13994g00001.1 144 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDHAAIQLRG 194
                               59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.9E-4218202IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.14E-29144202No hitNo description
SMARTSM003806.2E-32145202IPR001471AP2/ERF domain
PfamPF008471.9E-12145194IPR001471AP2/ERF domain
PROSITE profilePS5103223.63145202IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-21145201IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.6E-30145202IPR001471AP2/ERF domain
PRINTSPR003671.6E-10146157IPR001471AP2/ERF domain
PRINTSPR003671.6E-10168184IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MDQQTMLSSR VKYTEHRKQT TMVKPSVPAT VTGRRKCPEM NAANVGPRVV RITVTDADAT  60
DSSSDEGEGL YGRHRVKKFV NEVRIEPCMG ETVKSNGSDN GSVSGVLRNG SSESGIAPKR  120
RKKNAGATKA EATAARGLKA NNVKKFRGVR QRPWGKWAAE IRDPLRRVRL WLGTYDTAEE  180
AAMVYDHAAI QLRGPDALTN FA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20144201462ATERF1
3gcc_A3e-20144201462ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240845.11e-139PREDICTED: ethylene-responsive transcription factor CRF2
TrEMBLA0A1J6KL081e-137A0A1J6KL08_NICAT; Ethylene-responsive transcription factor crf2
STRINGXP_009763317.11e-137(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.23e-40cytokinin response factor 2