PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg14138g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 146aa    MW: 16784.8 Da    PI: 6.2333
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg14138g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22.1e-114368126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                              y   +C+++ +tG C yG+ CkF H+
  Niben101Ctg14138g00002.1 43 YQPDICKDYKETGNCGYGNACKFLHD 68
                              67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.19E-94073IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2024270IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-74269IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-94368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-124373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.8E-9104145IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578507.32E-10119145No hitNo description
CDDcd001620.00469120146No hitNo description
PROSITE patternPS005180135144IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MNQYTDYKAG LRREHTISSE KACGAHGPLR ASAHIRVSTR FDYQPDICKD YKETGNCGYG  60
NACKFLHDRG DYKAGRQLEK EWEEAAKERK RKLAMGMLDE DDDDAEKSDE DDDDSLPFAC  120
FICRQPFVDP IMTKCKHYFC AHCALK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-3927146181288RING finger protein 113A
5z58_M3e-3927146181288RING finger protein 113A
6ff4_t3e-3927146181288RING finger protein 113A
6ff7_t3e-3927146181288RING finger protein 113A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794839.12e-95PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_016511945.12e-95PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-72C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A1S4DEQ94e-94A0A1S4DEQ9_TOBAC; zinc finger CCCH domain-containing protein 1-like
TrEMBLA0A1U7Y6H24e-94A0A1U7Y6H2_NICSY; zinc finger CCCH domain-containing protein 1
STRINGXP_009794839.16e-95(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.12e-64C3H family protein