PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Ctg14421g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 245aa MW: 26709.4 Da PI: 7.589

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Ctg14421g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.2	2.9e-29	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +l+l+++ p++ +++++sl+yeA+ r+ +P+yG++g++ Niben101Ctg14421g00002.1 4 SCNGCRVLRKGCNEQCSIRPCLqwiksPEAQSNATLFLAKFYGRAGLLNLINSGPDHLCPAIFRSLLYEACGRIVNPIYGSTGLL 88 6********************************************************************************** PP DUF260 81 lklqqqleqlkaelallke 99 +++++ql+q+++e++l ++ Niben101Ctg14421g00002.1 89 TSGNWQLCQAAVEAVLSGA 107 **********9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.746	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.7E-23	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MRLSCNGCRV LRKGCNEQCS IRPCLQWIKS PEAQSNATLF LAKFYGRAGL LNLINSGPDH 60 LCPAIFRSLL YEACGRIVNP IYGSTGLLTS GNWQLCQAAV EAVLSGASIE KLSPDSAANT 120 VCPSLNACDI RHVSKENDLT PDLHKVKMRT KFKRVSAKPQ QRNQSPEVDD AARVMWSWSH 180 KEEPIGSPSR ESGLSQQREG ESGDADSGSV ETVEDSLAKL ENDIGLELTL GLQPLIKLPQ 240 CGTTR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019244132.1	1e-166	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886	9e-77	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A1J6IKE1	1e-164	A0A1J6IKE1_NICAT; Lob domain-containing protein 41
STRING	XP_009630484.1	1e-165	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	4e-79	LOB domain-containing protein 41