PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Ctg14882g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 273aa MW: 29214.8 Da PI: 5.7494

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Ctg14882g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.1	5.5e-37	89	184	3	98
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesss 79 + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ Niben101Ctg14882g00002.1 89 PPKRSSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVsvngtlkiP----- 168 6799***********************************************************77777444211111110..... PP TCP 80 ssasnsssgkaaksaaksk 98 + ++ + ++ ++a+++ Niben101Ctg14882g00002.1 169 --TTSPATN-SEGENATKR 184 ..1111111.111111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.1E-30	93	174	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.342	94	148	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MENKQNIEPE NDEVNDSKIL SADPLLGDSE EYTIKAVGQH VTDAEGVGPS SPSTDIVPLL 60 KEEPAENDLR GGTISVGLNM QLQKVENPPP KRSSKDRHTK VEGRGRRIRM PAACAARIFQ 120 LTRELGHKSD GETIRWLLER AEPAIIEATG TGTVPAIAVS VNGTLKIPTT SPATNSEGEN 180 ATKRRKRAAN SEFYDVHEPS NFAPVAPIAP QSLLPVWAVA SGNGLVPTTG GTTFFMVQPP 240 PTSTTTIATA GPSYPPQLWA TPLYNIPGRP ISN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019231219.1	0.0	PREDICTED: transcription factor TCP19-like
Swissprot	O64647	4e-60	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A314KIA9	0.0	A0A314KIA9_NICAT; Transcription factor tcp19
STRING	XP_009780060.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	3e-61	TCP family protein