PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Ctg15328g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 142aa MW: 16424.9 Da PI: 10.0481

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Ctg15328g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	92.3	7.6e-29	47	134	250	337
GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334 s+ F +rf eal +ys+lfd+lea++pre +er+ +E+ +lgre++nv+ace aer+er et+++W+ r+++aGF+++pl+e+++ Niben101Ctg15328g00002.1 47 SPFFITRFREALFHYSSLFDMLEANIPREVHERVLIEKNILGREAKNVIACEAAERIERPETYKQWQIRIMKAGFRQLPLDEEIM 131 678********************************************************************************99 PP GRAS 335 kqa 337 a Niben101Ctg15328g00002.1 132 RMA 134 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	20.134	1	142	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.6E-26	47	134	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
NGVSKGSNGK KQGSKRDVVE LSKDSQAKKQ GGIVVLRWGT GCRGYLSPFF ITRFREALFH 60 YSSLFDMLEA NIPREVHERV LIEKNILGRE AKNVIACEAA ERIERPETYK QWQIRIMKAG 120 FRQLPLDEEI MRMATEHDRC RQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009800214.1	1e-55	PREDICTED: scarecrow-like protein 14
Refseq	XP_016458641.1	1e-55	PREDICTED: scarecrow-like protein 14
Swissprot	O80933	2e-34	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A1S3Z2G9	2e-54	A0A1S3Z2G9_TOBAC; scarecrow-like protein 14
TrEMBL	A0A1U7YLT7	2e-54	A0A1U7YLT7_NICSY; scarecrow-like protein 14
STRING	XP_009800214.1	4e-55	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	2e-36	GRAS family protein