PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg15612g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 258aa    MW: 29695.5 Da    PI: 5.6353
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg15612g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.9e-08136180655
                               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +++ r+RR++i ++ +eL +l+P       +K++ a++ + A +YI+ Lq
  Niben101Ctg15612g00002.1 136 SIAARQRRKKITEKTQELGKLIPGG-----QKMNTADMFQAAYNYINFLQ 180
                               6788*******************86.....7*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.07E-9128183No hitNo description
PROSITE profilePS5088812.557130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-11131189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-11133186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-9136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-5136180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDSLIYYSSN SYLGTTVNHD EVNSELMAVD DQLLLSFKDE SFPIQDTCFL EPLYNSNHLF  60
LPQVNSYHQQ FNNLQSFPKR HKIFQDNCYQ ETRNNYFNGF VPMLPEFESL PVYKSENGIG  120
TKESSKCNEK NLSAQSIAAR QRRKKITEKT QELGKLIPGG QKMNTADMFQ AAYNYINFLQ  180
AQVGILQFMA SYQEKGEPFQ NPQLYKFVGS PLIQEKLYSS DKCLVPEMLI EALANDHEFQ  240
HSNPQILKEV NQLIKPGS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795118.14e-96PREDICTED: transcription factor bHLH52
TrEMBLA0A1U7XW089e-95A0A1U7XW08_NICSY; transcription factor bHLH52
STRINGXP_009795118.12e-95(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.13e-30bHLH family protein