PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg15635g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 144aa    MW: 16227.5 Da    PI: 8.7256
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg15635g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000393355123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C+ C+k+Fs+   L  H  +H
  Niben101Ctg15635g00003.1 33 FECKTCNKRFSSFQALGGHRTSH 55
                              89**********99998888777 PP
2zf-C2H212.80.000357799123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C++Cg+ F     L  H+r+H
  Niben101Ctg15635g00003.1 77 HQCSICGMEFFMGQALGGHMRRH 99
                              79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.113355IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.38E-83399No hitNo description
PROSITE profilePS5015710.8663360IPR007087Zinc finger, C2H2
PfamPF139121.3E-113357IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
SMARTSM003550.0937799IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.32877104IPR007087Zinc finger, C2H2
PfamPF139123.9E-977101IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MKRSREEDSE VEAEAMANCS MLLSRLNNNT SSFECKTCNK RFSSFQALGG HRTSHKSLRS  60
SSTDARSKSK KPKNNMHQCS ICGMEFFMGQ ALGGHMRRHR APTNVPVLNN SNILCLDLNL  120
TPDDQNDDFM LWPTTPAPVL RCFI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779269.11e-98PREDICTED: zinc finger protein ZAT11-like
RefseqXP_016459318.11e-98PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD47e-30ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A1S3Z4I92e-97A0A1S3Z4I9_TOBAC; zinc finger protein ZAT11-like
TrEMBLA0A1U7WX562e-97A0A1U7WX56_NICSY; zinc finger protein ZAT11-like
STRINGXP_009779269.14e-98(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-33C2H2 family protein