PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg15714g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 165aa    MW: 18672.7 Da    PI: 8.7852
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg15714g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000354668123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C+ C+k+F++   L  H  +H
  Niben101Ctg15714g00002.1 46 FECKTCNKRFPSFQALGGHRASH 68
                              89**********99999998887 PP
2zf-C2H214.20.0001390112123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++Cg+ Fs    L  H+r+H
  Niben101Ctg15714g00002.1  90 HECSICGMEFSLGRALGGHMRRH 112
                               78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0754668IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1184673IPR007087Zinc finger, C2H2
SuperFamilySSF576675.75E-946112No hitNo description
PfamPF139126.0E-134670IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.9E-488115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.01490117IPR007087Zinc finger, C2H2
SMARTSM003550.06590112IPR015880Zinc finger, C2H2-like
PfamPF139126.2E-890115IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MTCMKRSRED EMQVEAKAIA NCALMLLSRL NNNNTTSTDQ HYHNEFECKT CNKRFPSFQA  60
LGGHRASHKR PKLLAGIGDF LVQSKKSKMH ECSICGMEFS LGRALGGHMR RHRDEINKTS  120
AAAEKVTIPQ NNFCCLDLNL IPDIDVELKL WPTTPVLSPV LRIFI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628782.16e-95PREDICTED: zinc finger protein ZAT12-like
RefseqXP_016486485.16e-95PREDICTED: zinc finger protein ZAT12-like
TrEMBLA0A1S4BC321e-93A0A1S4BC32_TOBAC; zinc finger protein ZAT12-like
STRINGXP_009628782.12e-94(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-29C2H2 family protein