PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00010g04002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 305aa MW: 34671.1 Da PI: 6.7783

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00010g04002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180	6.2e-56	5	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeel+++yL++kv++ ++++ ++i++vd++k+ePwdLp+k++ +ekewyfFs +d+ky+tg r+nrat++gyWk+ Niben101Scf00010g04002.1 5 LPPGFRFHPTDEELITFYLTNKVSDFSFSA-RAIADVDLNKCEPWDLPAKASMGEKEWYFFSLKDRKYPTGLRTNRATEAGYWKT 88 79************************99.89***********999999*************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkdke+++ +g +vg+kktLvfykgrapkgekt+Wvmheyrl Niben101Scf00010g04002.1 89 TGKDKEIFR-GGVVVGIKKTLVFYKGRAPKGEKTNWVMHEYRL 130 *****.*****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.76E-65	3	147	IPR003441	NAC domain
PROSITE profile	PS51005	59.909	5	147	IPR003441	NAC domain
Pfam	PF02365	3.0E-28	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MEEKLPPGFR FHPTDEELIT FYLTNKVSDF SFSARAIADV DLNKCEPWDL PAKASMGEKE 60 WYFFSLKDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRGGV VVGIKKTLVF YKGRAPKGEK 120 TNWVMHEYRL AFKPSKEEWV VCRVFQKSST VKKPQPTSSS PQSLESPNCD ANTIITNELG 180 DIELPMNFNC LAIPSNGMIS NNISLHNYNN ENMNMNLATS LLNSSNLSSV NSLLFRALQL 240 RVYQPREATT TTQDYSFMPP IQGNDFSFNF VDNIGAVPSS SMVFDNSVQQ QEAQEQPYKL 300 DSNIW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-59	5	153	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-59	5	153	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-59	5	153	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-59	5	153	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	7e-59	5	153	20	174	NAC domain-containing protein 19
3swm_B	7e-59	5	153	20	174	NAC domain-containing protein 19
3swm_C	7e-59	5	153	20	174	NAC domain-containing protein 19
3swm_D	7e-59	5	153	20	174	NAC domain-containing protein 19
3swp_A	7e-59	5	153	20	174	NAC domain-containing protein 19
3swp_B	7e-59	5	153	20	174	NAC domain-containing protein 19
3swp_C	7e-59	5	153	20	174	NAC domain-containing protein 19
3swp_D	7e-59	5	153	20	174	NAC domain-containing protein 19
4dul_A	6e-59	5	153	17	171	NAC domain-containing protein 19
4dul_B	6e-59	5	153	17	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016433985.1	0.0	PREDICTED: NAC domain-containing protein 100-like
TrEMBL	A0A1S3X1W9	0.0	A0A1S3X1W9_TOBAC; NAC domain-containing protein 100-like
STRING	XP_009779881.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	8e-95	NAC domain containing protein 58