PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00010g05014.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 236aa MW: 27115.9 Da PI: 9.6999

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00010g05014.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13	0.00019	147	163	4	20
HHHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsaf 20 +h+ +Er RR++iN+++ Niben101Scf00010g05014.1 147 SHSLAERLRREKINERL 163 8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.49E-5	141	195	No hit	No description
SuperFamily	SSF47459	1.83E-9	143	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-10	143	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MAYHLLNPDM QINNPSFSVF NTDSSLNFNN QFPQLDLNPT SLDMSNFNFQ SFVGFSNENI 60 ITQAPEFPKI NFQEDDKNKV IIQARNYINE SKKRKIIRPQ KAVLLIHLLQ FLGSKGKGKK 120 VKSDEKEEDN PKQVVHVRAK RGQATDSHSL AERLRREKIN ERLGVCKTLF QDSMGMAVML 180 DEIINYVQSL QNQVERAKAY EANIMQKLRK EGVASSNQIG PLHHTFGCYP HFPYNT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019257970.1	1e-117	PREDICTED: transcription factor BEE 3-like
TrEMBL	A0A1J6HUX5	1e-116	A0A1J6HUX5_NICAT; Transcription factor bee 3
STRING	XP_009620411.1	1e-110	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3971	23	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	2e-26	bHLH family protein