PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00021g01016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 231aa    MW: 26234.6 Da    PI: 9.6996
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00021g01016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.61.5e-3346103359
               ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                                v+YkeClkNhAas+Ggh+vDGCgEf+ps++++ +++++lkC ACgCHRnFHRre+++
  Niben101Scf00021g01016.1  46 VVTYKECLKNHAASIGGHTVDGCGEFIPSPDATvADPTSLKCDACGCHRNFHRREPDD 103
                               689******************************9*********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.8E-2847101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2247104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.5E-3048100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.74949100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.3E-28125194IPR009057Homeodomain-like
SuperFamilySSF466893.07E-18126193IPR009057Homeodomain-like
TIGRFAMsTIGR015652.3E-24132188IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MASTCSIPTP TPIPTKTQLP LKPLSFTNVT SKKHHQVHNH QPRSAVVTYK ECLKNHAASI  60
GGHTVDGCGE FIPSPDATVA DPTSLKCDAC GCHRNFHRRE PDDDFMDFRH HHAQVATPAT  120
PTALKPENPR RRRRFRTKFS QEQKNKMYSF SEKLGWKLQK CDEAMVEEFC NEIGVVKGVF  180
RVWMHNNKST LGKKDFQNAN NSTRPYPTTT NSNLDHSTRL YSIENNGFNI K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-191331901875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788413.11e-132PREDICTED: zinc-finger homeodomain protein 9-like
RefseqXP_016439200.11e-132PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG04e-56ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A1S3XGW01e-131A0A1S3XGW0_TOBAC; zinc-finger homeodomain protein 9-like
TrEMBLA0A1U7XC141e-131A0A1U7XC14_NICSY; zinc-finger homeodomain protein 9-like
STRINGXP_009788413.11e-131(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-52zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]