PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00034g01011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 280aa    MW: 32513 Da    PI: 10.157
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00034g01011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.91.6e-121962711694
                               EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..EE CS
                        B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgrsefelvv 94 
                               +++p +fa+  g++  ++k++tl + +g++W+v +  +  + r+++++GW  F k+n++   g+++ Fkl++ ++++++v
  Niben101Scf00034g01011.1 196 VTIPMTFARWSGII--NTKKITLINGEGKEWKVDI--EHVGPRVLIKGGWAAFRKQNKIAaNGETCRFKLIQGRRRRCYV 271
                               69******999988..5568***************..999999****************989********9876665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.44E-155107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-136107IPR015300DNA-binding pseudobarrel domain
CDDcd100178.54E-89103No hitNo description
SMARTSM010191.1E-511105IPR003340B3 DNA binding domain
PROSITE profilePS5086311.74422105IPR003340B3 DNA binding domain
SuperFamilySSF1019361.26E-13178271IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-13178270IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.165181278IPR003340B3 DNA binding domain
SMARTSM010190.0014184275IPR003340B3 DNA binding domain
PfamPF023624.9E-10196271IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MLVDPDKYPS FCKLLFRQGF MDKILMPPVF IKENKKKLAK TCLLKTDVAG GMSWEAKIMR  60
ENSYYFICEG EWPKFVAHYK LKLGDILLFF LVDKSTFQVL PYRQKTCKNL CRRQPFEELS  120
SSSEEEEERD VGIQLSRKVK KVKTEPIESP GVAEEEEAQN GSKENGRKTL RYSVVNLKNQ  180
NPYYEMAVRK THSLFVTIPM TFARWSGIIN TKKITLINGE GKEWKVDIEH VGPRVLIKGG  240
WAAFRKQNKI AANGETCRFK LIQGRRRRCY VLQVEKISKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780425.11e-173PREDICTED: putative B3 domain-containing protein At5g66980 isoform X1
TrEMBLA0A1J6KFL91e-172A0A1J6KFL9_NICAT; Uncharacterized protein
STRINGXP_009780425.11e-172(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48881327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.17e-11B3 family protein