PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00046g07007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 314aa MW: 36350.1 Da PI: 5.6558

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00046g07007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.8	1.9e-13	16	103	1	94
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkl 84 f+k+l ++d +s+ l +pk+ a ++ +s +l+ d+ + We+ l+ ++ ++r + lt+ WkeFv++n+Lk++D vv+k Niben101Scf00046g07007.1 16 FEKKL-TEDDISSDHLQIPKRMA-HYI----QSLELQRADPGEKYWEMDLQLDNWGDReCQLTGQWKEFVNENKLKAKDLVVIKI 94 78888.667777777*****9.552....45689999*******99666555599*********************6 PP -SSSEE..EE CS B3 85 dgrsefelvv 94 + +e++l++ Niben101Scf00046g07007.1 95 FN-NEKRLKI 103 55.4554555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.0E-12	11	109	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.24E-12	13	99	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.15E-9	15	103	No hit	No description
PROSITE profile	PS50863	9.488	15	109	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0021	16	109	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.5E-11	16	104	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MGTAWVYRDE NGKQIFEKKL TEDDISSDHL QIPKRMAHYI QSLELQRADP GEKYWEMDLQ 60 LDNWGDRECQ LTGQWKEFVN ENKLKAKDLV VIKIFNNEKR LKIGCTSDQK GINLNNPVFL 120 RRLSRADVKG LYVQKLREQY SYSDNTGLIE IEPVIEMKLC SEIVYRYGGT NGVMFIQLPK 180 KEVEKNFGRD LSLPAVGGEI SLPLFDPVGN NVVEMKLVHT EKDEYHVGGE WEIYAAKYDL 240 LMSDTIFLDK VTVHRDHDHD HELNNPSTAK FSYHYEITYQ RRRWTKDQSS LAAAAATVLD 300 DAARNVTNID DLRA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009590841.1	0.0	PREDICTED: uncharacterized protein LOC104087951
TrEMBL	A0A1J6IMK1	0.0	A0A1J6IMK1_NICAT; Uncharacterized protein
STRING	XP_009590841.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14354	3	4