PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00047g03012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 195aa    MW: 22061.8 Da    PI: 7.4629
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00047g03012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83e-11128173655
                               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++I+ Lq
  Niben101Scf00047g03012.1 128 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIRTLQ 173
                               689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.954122172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-15125188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.87E-10126177No hitNo description
Gene3DG3DSA:4.10.280.101.9E-14127187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12128178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-9128173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MFRSIRRGIF TRQEVLSQIA EENEDVEGTS TEDGYRKSTH SYATASSFAM GSWEDNNSIM  60
FSVTPSKRAK HISDDIVNGL DDGETQFRFG LSQTALEMAS MDRLLHIPED SVPCKIRAKR  120
GCATHPRSIA ERERRTRISG KLKKLQDLVP NMDKQTSYAD MLDLAVQHIR TLQDQVQNLN  180
TELENCKCGC KKSSQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803687.11e-133PREDICTED: transcription factor bHLH128-like isoform X2
RefseqXP_016489054.11e-133PREDICTED: transcription factor bHLH128-like isoform X2
SwissprotQ8H1026e-60BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A1S4BJN91e-132A0A1S4BJN9_TOBAC; transcription factor bHLH128-like isoform X2
TrEMBLA0A1U7YHV31e-132A0A1U7YHV3_NICSY; transcription factor bHLH128-like isoform X2
STRINGXP_009803686.11e-132(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64552328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]