PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00048g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 373aa    MW: 41763.6 Da    PI: 9.9951
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00048g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.93e-3068350128
                       NAM  50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               +v ++++ew+fFs+r +ky++g++++rat+sgyWkatgk+++v+s +++l+g+k+tLvf++grapkg++t+W+mhey +
  Niben101Scf00048g00004.1   6 SVIQSDNEWFFFSPRGRKYPNGSQSKRATESGYWKATGKERNVKS-GSNLIGTKRTLVFHTGRAPKGQRTHWIMHEYCM 83 
                               4556789**************************************.9******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100535.0081140IPR003441NAC domain
SuperFamilySSF1019419.94E-33293IPR003441NAC domain
PfamPF023652.3E-141282IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MLPAKSVIQS DNEWFFFSPR GRKYPNGSQS KRATESGYWK ATGKERNVKS GSNLIGTKRT  60
LVFHTGRAPK GQRTHWIMHE YCMSGNTNYQ KPSPGLDRFR NSIMLPLPHS GDFYYVTTFR  120
TLEIFIAHID SMVVCRLRKN SEFHLNGTPR NQRNQLSATA TATAQSGAGQ LGSLELVTVG  180
GCCCSKEGSS SFYSHSVEQM DSGSESDKPT KEFSQHDSSG HFKDCDGEED WFADIMKDDI  240
IKLDDSSLND QPISMVPSRP ESSISTHEAR AAMSGVAPFQ GTANRRLRLV REKVVVCPVK  300
GSRRYEATKK NKMGVSTSSS GRWLRNMFSV KTMKQYVMPI FLVAFILLVM LLSMLGVSQQ  360
VKWLRCVFVL TSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-2418161140NO APICAL MERISTEM PROTEIN
1ut4_B2e-2418161140NO APICAL MERISTEM PROTEIN
1ut7_A2e-2418161140NO APICAL MERISTEM PROTEIN
1ut7_B2e-2418161140NO APICAL MERISTEM PROTEIN
3swm_A2e-2418164143NAC domain-containing protein 19
3swm_B2e-2418164143NAC domain-containing protein 19
3swm_C2e-2418164143NAC domain-containing protein 19
3swm_D2e-2418164143NAC domain-containing protein 19
3swp_A2e-2418164143NAC domain-containing protein 19
3swp_B2e-2418164143NAC domain-containing protein 19
3swp_C2e-2418164143NAC domain-containing protein 19
3swp_D2e-2418164143NAC domain-containing protein 19
4dul_A2e-2418161140NAC domain-containing protein 19
4dul_B2e-2418161140NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019232292.10.0PREDICTED: NAC domain-containing protein 89-like
TrEMBLA0A1B1FBP70.0A0A1B1FBP7_NICBE; Endoplasmic reticulum transcription factor
STRINGXP_009758643.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41542243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.15e-45NAC domain containing protein 60