PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00054g00013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 236aa    MW: 27092.1 Da    PI: 5.9418
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00054g00013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.8e-0922551148
                              HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +l++a +q G   W++Ia++++  Rt++++k++w+++l
  Niben101Scf00054g00013.1 22 KLLEARNQKG---WAAIASYLP-QRTDNDIKNYWNTHL 55
                              6777777777...*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.506159IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-131962IPR009057Homeodomain-like
CDDcd001674.77E-72155No hitNo description
PfamPF002496.1E-82255IPR001005SANT/Myb domain
SuperFamilySSF466892.24E-82761IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDNEEISLVD EVQQKLQAKM DKLLEARNQK GWAAIASYLP QRTDNDIKNY WNTHLKKKLK  60
KFQTGLDHHS HLSSPPADHH SNTCDHFSWN FMSDNNKQGS KLLLQQNHNS PNSSTSLYAS  120
STENISRLLE GWMRSSPNPT TKVDEMILHE NQHNHDDQDL FKSRETSLVQ DEGICNSIKT  180
IPREYKSVFS DCESSGVAEK TMNTNTPPPF TYLEKWLLEE NAAQVEELMG LPMIFT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019227638.11e-118PREDICTED: transcription factor MYB30-like
TrEMBLA0A314KPL01e-116A0A314KPL0_NICAT; Transcription factor myb30
STRINGXP_009772442.11e-116(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.21e-28myb domain protein 60