PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00063g01019.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 456aa    MW: 50587 Da    PI: 8.5676
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00063g01019.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.24.6e-16233279455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L ++++Y+k+Lq
  Niben101Scf00063g01019.1 233 VHNQSERRRRDRINQKMKALQRLVPNA-----SKTDKASMLDEVINYLKQLQ 279
                               6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.752229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-19232302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-13233279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-18234292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.13E-16234283No hitNo description
SMARTSM003537.2E-17235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MSHCTVPTWN PRHQRQEQAA EAEEANQYPH VHNQQINHFM PMSKCEKVAE LMTWENRQIG  60
MHGVGGILSM SQTKPTILGR AGDTLESIVH QATYHGQNQT SIQNYDQNQN LKIGMCVGKW  120
GETSQHQMAP TGATVLAKKR MRSESEPQYF GKLVGEDAYA ERSACASASA TFCRENDTTM  180
VTWPSFDESS RSIKSKTTCD EDSACHDGGS ENKEEEHETK RSNSSRRSRA AVVHNQSERR  240
RRDRINQKMK ALQRLVPNAS KTDKASMLDE VINYLKQLQA QVQLMNSVRN MAPQMMMPLG  300
MHQHIQMSLL ARMGMGVGLG MGMGMFDMAA LARAAAAPHQ SLTTHPLLHT NPIATTPTNP  360
FIPSAFAMPA APAIPSAAQA NNTVGRATTA VTPATTTTSN SAPFTDPYSA FLTQSMNMEY  420
FNNMAALYRH QAKKHFTQTT CNNLNQENLN IQGQRE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237242ERRRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630766.10.0PREDICTED: transcription factor UNE10-like isoform X2
TrEMBLA0A314KKX90.0A0A314KKX9_NICAT; Transcription factor une10
STRINGXP_009630765.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54371732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-34bHLH family protein