PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00063g07011.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 265aa MW: 30234.3 Da PI: 9.8137

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00063g07011.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.8	5.3e-33	6	83	51	129
NAM 51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkdke+++ +++lvg+kktLvfykgrapkgekt+Wv heyrle Niben101Scf00063g07011.1 6 AKIGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGKDKEIFR-GKSLVGMKKTLVFYKGRAPKGEKTNWVTHEYRLE 83 566899************************************.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.086	1	107	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-37	6	107	IPR003441	NAC domain
Pfam	PF02365	3.9E-15	11	82	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MRSRKAKIGE KEWYFFCVRD KKYPTGLRTN RATAAGYWKA TGKDKEIFRG KSLVGMKKTL 60 VFYKGRAPKG EKTNWVTHEY RLEGRLSLHN LPKTAKNDWV ICRVFQKTTG GNKIHISGLM 120 QSKSTGDEMG NSLLPPLTDS SPTHVHCFSN FLTAQKSEEN MINYFDTSPN FAPLSNPMDI 180 FPRNSLPNTF SWNQTVPFPY PGSFPVQDPA SLRNLLENYG QNMQQNFKKE KDMVSVSQET 240 GLSTDMNTEI TSSVVQQDLD CLWTY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-33	5	113	65	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-33	5	113	65	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-33	5	113	65	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-33	5	113	65	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-33	5	113	68	174	NAC domain-containing protein 19
3swm_B	6e-33	5	113	68	174	NAC domain-containing protein 19
3swm_C	6e-33	5	113	68	174	NAC domain-containing protein 19
3swm_D	6e-33	5	113	68	174	NAC domain-containing protein 19
3swp_A	6e-33	5	113	68	174	NAC domain-containing protein 19
3swp_B	6e-33	5	113	68	174	NAC domain-containing protein 19
3swp_C	6e-33	5	113	68	174	NAC domain-containing protein 19
3swp_D	6e-33	5	113	68	174	NAC domain-containing protein 19
4dul_A	5e-33	5	113	65	171	NAC domain-containing protein 19
4dul_B	5e-33	5	113	65	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009767926.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	2e-88	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1Q1N6K5	0.0	A0A1Q1N6K5_NICBE; Oresara 1-like protein
STRING	XP_009767926.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	8e-91	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]