PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00063g13003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 318aa MW: 36768.4 Da PI: 4.848

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00063g13003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.2	2.5e-26	141	190	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +s e++skyF++pi++AAkeL+++lT+LK++CR++GI+RWPhRk+ sl Niben101Scf00063g13003.1 141 RMLSRETISKYFYMPITQAAKELNIGLTLLKKRCRELGIRRWPHRKLMSL 190 57899******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.677	125	211	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-21	143	190	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MRSQSNFEVM STDQENHHDV FSFPTQLPSL EFSGYSGHQA IDYQYDLSIQ EFDANPFMEF 60 TLDDPLYSSF YSTPFQCLTP GELYYGDRGN GFGLSDELGS GNNQLLLCDK TQEIIITNDH 120 VEEIKKKEKA SRQIDEINST RMLSRETISK YFYMPITQAA KELNIGLTLL KKRCRELGIR 180 RWPHRKLMSL QTVIKNVKEL EKGGGSGMEQ KLKDVIKLLE EEKKMLEEVP DMELEEKTKR 240 LRQARFKANY KRRKLMSMTE LQASFGSYCN SNPAVCIGYG HREEEDDYDD DEEIKSLLAD 300 CFSSSSPTLD DRSFSLYN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	238	254	KRLRQARFKANYKRRKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778708.1	0.0	PREDICTED: protein RKD1
TrEMBL	A0A314KII8	0.0	A0A314KII8_NICAT; Protein rkd2
STRING	XP_009778708.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4274	21	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	6e-47	RWP-RK domain-containing protein