PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00067g02010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 427aa    MW: 47735.3 Da    PI: 6.6077
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00067g02010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.8e-08341381954
                               HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  Niben101Scf00067g02010.1 341 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 381
                               69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-14337394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-13338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-12340390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-5341381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.19E-4354386No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MESLNWDESP VFQEFGASFD PIHVISNWNM SQRQEAAVRL AADSMAAKSA ADLSRDCVEN  60
GFSSSPMLNM PNYISDSNPM ALHGPMPDFS SNGQVQEINK PTHKLLSNTC SLESLDCLLS  120
ATTTTNNTDT SIEDDGMSMI FADNSKSLWN FNSSSESPIH NASFEALKHA PGYQQLLTCQ  180
SGDKILQEEE RKRKTYKPIN GKDLDETVSQ SSPNHKNNKR SHNQALENSP SEFNLFESDS  240
LNRDCGNFQL ISEKQAKSKK PRLTTESYNK PRPSSSNINF QQASSSVSSI DQEPDPEAIV  300
QMKEMIYRAA AFRPVNFGPE APEKPKRKNV RISTDPQTVA ARQRRERISE RIRVLQRLVP  360
GGSKMDTASM LDEAANYLKF LRSQVKALEA IGQKQDPFSS IPFNYPFPMQ LPHFPLQNPN  420
PIHGPKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1341346RQRRER
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244073.10.0PREDICTED: transcription factor bHLH87-like
RefseqXP_019244074.10.0PREDICTED: transcription factor bHLH87-like
TrEMBLA0A1J6J2T10.0A0A1J6J2T1_NICAT; Transcription factor bhlh87
STRINGXP_009614250.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43502242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-62bHLH family protein