PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00069g03001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 311aa    MW: 36137.6 Da    PI: 7.1205
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00069g03001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.5e-13140186354
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               + h ++Er+RR+++ ++f +L  +lP +     kK++Ka+iLe+A++++k+L
  Niben101Scf00069g03001.1 140 QHHIIAERKRREKLSQRFVTLSAILPGL-----KKVDKASILEQAIRHVKEL 186
                               5799************************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.377137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.75E-11140191No hitNo description
PfamPF000101.9E-10140186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-16140202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15141200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-13143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDNSSLRWFS RMGEAGAYYS NEKKSVDDFT TQKSTISEDG EIRELSLSPD SSHRSNYFNQ  60
ENKSKVSKFD FSLITPLENQ PKMNSNMFSF TNNMEQVDEM YLCDSDHKYY QFLKSKSGYD  120
HKDRLATKLG QGQKRERLDQ HHIIAERKRR EKLSQRFVTL SAILPGLKKV DKASILEQAI  180
RHVKELKEKV QQLEEEEKTR SQKSVMFVNK SQVEEDDHSS SSSDDENSHS DADIEVRFSD  240
KNVLIRITCE RRNAFVLNIH NEIEKLHLSI VQTSMMPFGK HAIDMDESFC MTLKDLVKNV  300
RTVTARLMTQ A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150ERKRRE
2146151RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791053.10.0PREDICTED: transcription factor bHLH18-like
RefseqXP_016480480.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1S4AV820.0A0A1S4AV82_TOBAC; transcription factor bHLH18-like
TrEMBLA0A1U7XJJ50.0A0A1U7XJJ5_NICSY; transcription factor bHLH18-like
STRINGXP_009791053.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136021316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-32bHLH family protein