PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00069g03014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YB
Protein Properties Length: 123aa    MW: 13973.7 Da    PI: 6.2594
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00069g03014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB139.31e-431811797
                     NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                              mk++lP nakisk+aket+qecvsefisfvt+easdkc+++krkt+ gdd++wal++lGf+dyveplk yl kyrelege+
  Niben101Scf00069g03014.1  1 MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHNQKRKTVHGDDICWALGSLGFDDYVEPLKRYLYKYRELEGER 81
                              9*****************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.0E-31185IPR009072Histone-fold
PfamPF008082.5E-20155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.1E-40186IPR009072Histone-fold
PRINTSPR006155.2E-181937No hitNo description
PROSITE patternPS0068502238IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.2E-183856No hitNo description
PRINTSPR006155.2E-185775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MKQILPPNAK ISKEAKETMQ ECVSEFISFV TGEASDKCHN QKRKTVHGDD ICWALGSLGF  60
DDYVEPLKRY LYKYRELEGE RVNQNKVGGN NIIEERGGEI GLYSSPRAHS TLYMPKDSTQ  120
SLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-331761792Transcription factor HapC (Eurofung)
4g92_B4e-331761792Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789273.13e-71PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822481e-45NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A1U7XEH87e-70A0A1U7XEH8_NICSY; nuclear transcription factor Y subunit B-5-like
STRINGXP_009789273.11e-70(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.18e-47nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]