PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00077g05004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 194aa    MW: 22738.7 Da    PI: 8.5596
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00077g05004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.72.3e-06101121323
                               ETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                               C+ Cg sF  + +Lk+H+++H
  Niben101Scf00077g05004.1 101 CEECGVSFQKPAHLKQHMQSH 121
                               *******************99 PP
2zf-C2H219.23.3e-06127151123
                               EEET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                               ++C+  dC  s++rk++L+rH+  H
  Niben101Scf00077g05004.1 127 FVCHidDCQSSYRRKDHLMRHLLQH 151
                               89*******************9887 PP
3zf-C2H214.88.5e-05156181123
                               EEET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                               ++Cp   C++ Fs + n++rH +  H
  Niben101Scf00077g05004.1 156 FECPvdSCKRAFSIQGNMTRHVKEmH 181
                               89********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355392548IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.1E-1071127No hitNo description
SMARTSM003550.009599121IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.42299126IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.6E-9101126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
SuperFamilySSF576677.71E-9115153No hitNo description
SMARTSM003550.039127151IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349127156IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-10127153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280129151IPR007087Zinc finger, C2H2
SuperFamilySSF576678.62E-6154182No hitNo description
Gene3DG3DSA:3.30.160.601.1E-4154178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.015156181IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.159156181IPR007087Zinc finger, C2H2
PROSITE patternPS000280158181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MRSNLVLGEM GEEKKEVIFR DIRRYYCEFC GICRSKKSLI SSHILSNHHD EMEERRKDEA  60
NEDVKKKKVP KMNICEECGV SFQKPXNEDV KKKKGPKMNI CEECGVSFQK PAHLKQHMQS  120
HSLERPFVCH IDDCQSSYRR KDHLMRHLLQ HQGKLFECPV DSCKRAFSIQ GNMTRHVKEM  180
HDQCASPEAN LPKX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf3_A3e-121031821090TRANSCRIPTION FACTOR IIIA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264540.11e-101PREDICTED: transcription factor IIIA-like isoform X2
SwissprotQ84MZ42e-48TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A314L4161e-99A0A314L416_NICAT; Transcription factor iiia
STRINGXP_009804391.12e-97(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.23e-43transcription factor IIIA