PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00089g02006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 263aa MW: 29612.8 Da PI: 8.704

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00089g02006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.4	4.2e-40	18	77	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+a+kcprCdstntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rknk+ s Niben101Scf00089g02006.1 18 EQAQKCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRIS 77 7899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	5	75	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-33	19	75	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.283	21	75	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	23	59	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MLVCTKQDQE KKTRPAAEQA QKCPRCDSTN TKFCYYNNYS LTQPRYFCKS CRRYWTKGGT 60 LRNVPVGGGC RKNKRISSKR SQDQSLTNSP NNAISSITPT SYDSSSDLSL AFARLQKQAN 120 GNLGIEENDN MAMMYNNHGN NIAPTSFLDT LRGGFLETPN GFQYQNLYYG NIIGSNDNNM 180 GQVQNGDMGR NYDQEMSGGK IVKQEMCNIA REGENNRILW GFPWQINGDM NNMSDFEASN 240 RQQNWNTGFG GSSWHGLVNS PLM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009598584.1	0.0	PREDICTED: dof zinc finger protein DOF2.1-like
Refseq	XP_016489685.1	0.0	PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBL	A0A1S4BLF5	0.0	A0A1S4BLF5_TOBAC; dof zinc finger protein DOF2.1-like
STRING	XP_009598584.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	4e-42	Dof family protein