PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00090g02002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 362aa MW: 39144.1 Da PI: 9.9689

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00090g02002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.1	2.5e-15	284	334	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+k+ ee+ ++ Niben101Scf00090g02002.1 284 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELQKKQEEMLEM 334 79***************************************9887776555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-13	280	345	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.542	282	331	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.06E-11	284	333	No hit	No description
CDD	cd14707	1.48E-28	284	336	No hit	No description
Pfam	PF00170	3.0E-13	284	335	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.7E-15	284	333	No hit	No description
PROSITE pattern	PS00036	0	287	302	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MGGSGINGQE VGSVQGGNLQ RQCSMTLPRT LSHKTVDEVW RDMSKEYGGG KDGNSVGVPT 60 NLPQRQQTLG EITLEEFLVR AGVVREDAQL AAKSNNVGGI FADLSYAGNN TGVGFGYQEV 120 NRNTGEAGIQ AANLPLNVNG LRSTQQQLRA QQLQQQQLQP QPQQQQPQQQ PLFPKQPALA 180 YAAPISIPNN GQLGSPGMRG GMVGISDPAL NSNFVQGAAL TSGGMGMVGL GAGAVTVATA 240 SPAVSSDGLG KSSGDTPFVS PLPYVFNGSI RGRKYSTVEK VVERRQRRMI KNRESAARSR 300 ARKQAYTMEL EAEVAKLKEE NEELQKKQEE MLEMQKNEVM EMMNLQRGAK RRCLRRTETG 360 PW

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MGGSGINGQE VGSVQGGNLQ RQCSMTLPRT LSHKTVDEVW RDMSKEYGGG KDGNSVGVPT  60
NLPQRQQTLG EITLEEFLVR AGVVREDAQL AAKSNNVGGI FADLSYAGNN TGVGFGYQEV  120
NRNTGEAGIQ AANLPLNVNG LRSTQQQLRA QQLQQQQLQP QPQQQQPQQQ PLFPKQPALA  180
YAAPISIPNN GQLGSPGMRG GMVGISDPAL NSNFVQGAAL TSGGMGMVGL GAGAVTVATA  240
SPAVSSDGLG KSSGDTPFVS PLPYVFNGSI RGRKYSTVEK VVERRQRRMI KNRESAARSR  300
ARKQAYTMEL EAEVAKLKEE NEELQKKQEE MLEMQKNEVM EMMNLQRGAK RRCLRRTETG  360
PW

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001313058.1	0.0	bZIP transcription factor TRAB1-like
Refseq	XP_016506615.1	0.0	PREDICTED: bZIP transcription factor TRAB1-like
Swissprot	Q9M7Q4	4e-99	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	V9XND3	0.0	V9XND3_TOBAC; ABRE binding factor
STRING	XP_009592272.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA776	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	3e-65	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]