PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00094g02004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 180aa    MW: 19865.3 Da    PI: 10.0692
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00094g02004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.81.5e-184175135
                      GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                              C+ Cgt kTplWR gp g+k+LCnaCG++ rkk++
  Niben101Scf00094g02004.1 41 CVDCGTAKTPLWRGGPAGPKSLCNACGIRSRKKRR 75
                              ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.4E-143585IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.0183571IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.42E-123975No hitNo description
Gene3DG3DSA:3.30.50.104.4E-154075IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.29E-134091No hitNo description
PROSITE patternPS0034404166IPR000679Zinc finger, GATA-type
PfamPF003202.5E-164175IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MVDFSDKVSD HEVAENEEMS GQNQIPERVL SETSEIQLKT CVDCGTAKTP LWRGGPAGPK  60
SLCNACGIRS RKKRRALLGL NKEDKKPKKS MGSSNKSVSQ HHNQNNQSSN SSTSSSEEST  120
TSNAVKNNKC IPFKKRLLHF GREVTLQRPR SSSTQHRRKL GEEEQAAFLL MALSCGSVYA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019263561.11e-106PREDICTED: GATA transcription factor 15-like
TrEMBLA0A314L6241e-104A0A314L624_NICAT; Gata transcription factor 15
STRINGXP_009767635.11e-104(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-36GATA transcription factor 15