PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00109g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 299aa    MW: 33839 Da    PI: 4.5021
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00109g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.4e-1999189187
                               EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegD 78 
                               f+k+l +sdv++++r+v+pkk ae++    ++k  e++ +t+ d +g  +W+++++y  +++s++yvl+ ++ eFv+ +gL++gD
  Niben101Scf00109g00003.1  99 FDKQLQNSDVSSLRRIVVPKKAAERYlptlEIK--EGFPITMDDMDGiHVWSFRYRYwpNNSSRMYVLE-NTGEFVQTHGLRQGD 180
                               89**************************65544..7788********9*********888899999999.*************** PP

                               EEEEEE-SS CS
                        B3  79 fvvFkldgr 87 
                                + ++++++
  Niben101Scf00109g00003.1 181 YFALHYNDQ 189
                               ***998754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-2497191IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-2097191IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-2297186No hitNo description
PfamPF023623.5E-1699189IPR003340B3 DNA binding domain
PROSITE profilePS508639.38999201IPR003340B3 DNA binding domain
SMARTSM010191.8E-1499201IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MAMTEAYGVM ADGNAALVAN TPTSIINGVF EATTPIPTDI LNAQPPHQTT KRSRSQRRRR  60
SSINFGSVLD FPSFLPHVPP PPPMPVARAL EPTGFRFLFD KQLQNSDVSS LRRIVVPKKA  120
AERYLPTLEI KEGFPITMDD MDGIHVWSFR YRYWPNNSSR MYVLENTGEF VQTHGLRQGD  180
YFALHYNDQK QIYGIEARKA GDGAVFRGYE AEDMILTDYA QAADDGNGVL MNEPELDMSS  240
FYFPSMDNEM GMSFIYDTSF WNEPAFDFIG GPMTYYSTNV FPMPSFGSIE DSFSVDDFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A3e-46962022108B3 domain-containing transcription factor FUS3
6j9b_D3e-46962022108B3 domain-containing transcription factor FUS3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800270.10.0PREDICTED: B3 domain-containing transcription factor FUS3
TrEMBLA0A1U7YN450.0A0A1U7YN45_NICSY; B3 domain-containing transcription factor FUS3
STRINGXP_009800270.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80452125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.16e-54B3 family protein