PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00109g02005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 232aa MW: 25985.9 Da PI: 6.4077

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00109g02005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00053	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C++ F ++ L H++ H Niben101Scf00109g02005.1 57 FSCLYCSRKFCTSQALGGHQNAH 79 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.45E-5	54	84	No hit	No description
PROSITE profile	PS50157	10.97	57	84	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	59	79	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MADPSLVYDF WNQQQYSNST EMVMMSDINV ASPLNQQQQP IPIPKPNKPK VQPSRMFSCL 60 YCSRKFCTSQ ALGGHQNAHK RERAASRRTM FPVTGTDSDN RNMVHFHFLQ NNNDDDKQAL 120 EPSLTNYPLM TGQMQLPEQN IIDINGNINH TTTYSNPYAN YCSGQLQTPA SNSINVFNPF 180 SSADVYHPPP LPTLGFGGHN VYFTGGDATL STAQDLSSMD NHQLNLDLTL HL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019254803.1	1e-148	PREDICTED: zinc finger protein 6-like
TrEMBL	A0A1J6JKC0	1e-147	A0A1J6JKC0_NICAT; Zinc finger protein knuckles
STRING	XP_009800278.1	1e-133	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9238	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14010.1	4e-15	C2H2 family protein