PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00109g10012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 255aa    MW: 28978.8 Da    PI: 9.4749
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00109g10012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003397119223
                               EETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                               +C+ C+++++++ +L  H +  H
  Niben101Scf00109g10012.1  97 SCSVCSRVYPTSRLLSIHVSEaH 119
                               6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.616994IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807194IPR007087Zinc finger, C2H2
SMARTSM003555.496119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098119IPR007087Zinc finger, C2H2
SMARTSM003550.55134159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAMEVETQTQ SQLGFPFWSP IRRRFRPDDP FFTAGNIQRE LFAKQLALDL TDEEKQLVQN  60
ITDEESSNVF CPIVGCGARM RSLDDFEDHY ATRHTASCSV CSRVYPTSRL LSIHVSEAHD  120
SFFQAKVARG FPMYECLVEG CDVKLKSYKS RQQHLVDKHK FLATYEFFRK ARPSKKQRQK  180
IHHKQASRKT QETSSAMQVE DETMDNLVSA VSKLTTSDSP SAISFGRNRA RGLSFVPRAV  240
NRQIGPVTST GGTQK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238459.10.0PREDICTED: zinc finger protein 511
TrEMBLA0A1J6KRE10.0A0A1J6KRE1_NICAT; Uncharacterized protein
STRINGXP_009620329.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102112022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-101zinc ion binding;nucleic acid binding;zinc ion binding