PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00111g03006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 277aa    MW: 30101.1 Da    PI: 5.0535
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00111g03006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012252273323
                               ETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                               C+ C+++F +   L++H +t H
  Niben101Scf00111g03006.1 252 CKTCNRTFGSETALESHSKTkH 273
                               ******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.094250277IPR007087Zinc finger, C2H2
PROSITE patternPS000280252273IPR007087Zinc finger, C2H2
PfamPF139123.0E-6252274IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEFWGAEVKS GQPLTVQPGD YMVLHLSQAS LGEAKKDKIL EPVCLSVNVD GKKLVLGTLN  60
LDKLPQQQFD LVFDREFELS HNWKKGSVYF FGYKAANPYE QYPCHQSDEE IPLTLANTGK  120
AEAKASANDS TSDRQKVKIA EPSKDAKADD EDDSSDEEDE EDSEMGEDED DGDEDKSDEE  180
TPKKAEPSKK RPADSATKTP APDKKAKFAT PQKADGKKGA VHVATPHPSK QAGKTPGNKS  240
NQTPKSGGSL ACKTCNRTFG SETALESHSK TKHSAGK
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019229422.11e-152PREDICTED: histone deacetylase HDT1-like isoform X1
SwissprotQ6V9I61e-107HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA0A1S4AIY61e-149A0A1S4AIY6_TOBAC; histone deacetylase HDT1-like isoform X1
TrEMBLA0A1U7XIK51e-149A0A1U7XIK5_NICSY; histone deacetylase HDT1-like isoform X1
STRINGXP_009791887.11e-149(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31761823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.23e-34histone deacetylase 3
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]