PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00138g04001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 334aa MW: 37923.5 Da PI: 7.0626

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00138g04001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.7	5.5e-54	11	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgy 82 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL++ ++ + ++ewyfFs++dkky+tg+r+nrat++g+ Niben101Scf00138g04001.1 11 VPPGFRFHPTDEELLYYYLTKKVSYEAIDL-DVIREVDLNKLEPWDLKEicRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGF 94 69**************************.9***********954555442556********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg+dk+++ ++++ +g++ktLvfy+grap+g+ktdW+mheyrl Niben101Scf00138g04001.1 95 WKATGRDKAIYLSNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 140 ******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-60	6	163	IPR003441	NAC domain
PROSITE profile	PS51005	57.892	11	163	IPR003441	NAC domain
Pfam	PF02365	8.5E-28	12	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003002	Biological Process	regionalization
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0010455	Biological Process	positive regulation of cell fate commitment
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MSGAGNGQLS VPPGFRFHPT DEELLYYYLT KKVSYEAIDL DVIREVDLNK LEPWDLKEIC 60 RIGSGPQNEW YFFSHKDKKY PTGTRTNRAT TAGFWKATGR DKAIYLSNSK RIGMRKTLVF 120 YTGRAPHGQK TDWIMHEYRL DDNTAKVEPL QEDGWVVCRV FKKKNYTRGF QHELGEDDQE 180 QQLHFVDHMK SGNSDPKQNM QQPHHQACYD YASNFDGSMH LPQLLSPDLL SVNPCPQLPL 240 GTNMNLNECS HQNLLRLTSA AGAAGCSSST FNIVPQHDKF SGDWSFLDKL LASNQGAMQS 300 QAAIGDNLVN PTGTQKYPVF HHHGFDPDLF KFSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-51	8	165	14	167	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-51	8	165	14	167	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-51	8	165	14	167	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-51	8	165	14	167	NO APICAL MERISTEM PROTEIN
3swm_A	5e-51	8	165	17	170	NAC domain-containing protein 19
3swm_B	5e-51	8	165	17	170	NAC domain-containing protein 19
3swm_C	5e-51	8	165	17	170	NAC domain-containing protein 19
3swm_D	5e-51	8	165	17	170	NAC domain-containing protein 19
3swp_A	5e-51	8	165	17	170	NAC domain-containing protein 19
3swp_B	5e-51	8	165	17	170	NAC domain-containing protein 19
3swp_C	5e-51	8	165	17	170	NAC domain-containing protein 19
3swp_D	5e-51	8	165	17	170	NAC domain-containing protein 19
4dul_A	3e-51	8	165	14	167	NAC domain-containing protein 19
4dul_B	3e-51	8	165	14	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:19081078, ECO:0000269\|PubMed:20197506}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00250	DAP	Transfer from AT1G79580	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019247997.1	0.0	PREDICTED: NAC domain-containing protein 76 isoform X1
Refseq	XP_019247998.1	0.0	PREDICTED: NAC domain-containing protein 76 isoform X1
Refseq	XP_019247999.1	0.0	PREDICTED: NAC domain-containing protein 76 isoform X1
Swissprot	Q9MA17	1e-111	SMB_ARATH; Protein SOMBRERO
TrEMBL	A0A1J6ICA0	0.0	A0A1J6ICA0_NICAT; Protein sombrero
STRING	XP_009794036.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	1e-103	NAC family protein

Publications ? help Back to Top
Fendrych M, et al. Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis. Curr. Biol., 2014. 24(9): p. 931-40 [PMID:24726156] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]