PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00144g04001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 381aa    MW: 43305.4 Da    PI: 6.7705
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00144g04001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3106.41.4e-3397208199
                               EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                               f+k ltpsdv+k++rlv+pk++ae++             ++ +e++  l +edesg+sW+++++y+++s++yvltkGW++Fvk++
  Niben101Scf00144g04001.1  97 FEKPLTPSDVGKLNRLVIPKQYAEKYfplsgnnnnnnnnESGTEKGLLLGFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKEK 181
                               99****************************999998888555568899************************************* PP

                               T--TT-EEEEEE-SSSEE..EEEEE-S CS
                        B3  73 gLkegDfvvFkldgrsefelvvkvfrk 99 
                               +L++gD+v+F+++++++ +l+++++r+
  Niben101Scf00144g04001.1 182 RLDAGDIVLFERHRSDGDRLFIGWRRR 208
                               ***********98889999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-4289217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-3193207IPR015300DNA-binding pseudobarrel domain
CDDcd100175.48E-2996198No hitNo description
PfamPF023629.8E-3197209IPR003340B3 DNA binding domain
PROSITE profilePS5086314.98897209IPR003340B3 DNA binding domain
SMARTSM010191.3E-2897209IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MSINHISSSE LPETVWWTKQ QQYVMMDSSS KKTSSPSQFY HHHPPTPPET QTTTMFGFNL  60
NNMSNNEDDE ELEEQITADK DQNIEQREEE IPKELLFEKP LTPSDVGKLN RLVIPKQYAE  120
KYFPLSGNNN NNNNNESGTE KGLLLGFEDE SGKSWRFRYS YWNSSQSYVL TKGWSRFVKE  180
KRLDAGDIVL FERHRSDGDR LFIGWRRRNT AVSASVQESS AVVAPPGMVG GGGWAQVYYG  240
GSGGHPYPGA ALPYQPDCLH AGRGVLQNQT TTSVNNIKRQ VRLFGVNLDC EADEPSWSEP  300
PSTPDGSGSS TSSHHHQHHQ GPGQGQASEH YYQYQFQHSK PHVAASSYNN IHHNHMVHSL  360
FYQRKDRNFS RDVNQMRYHQ G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-47932084113B3 domain-containing transcription factor NGA1
5os9_B2e-47932084113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776788.10.0PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ9FNI37e-67Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A1U7WDQ70.0A0A1U7WDQ7_NICSY; B3 domain-containing protein At2g36080-like
STRINGXP_009776788.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.23e-62B3 family protein