PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00149g02005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 92aa MW: 10335.2 Da PI: 10.0228

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00149g02005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	82.2	5.6e-26	23	73	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+rl+Wt++LH+ F + v+qLGG+e+AtPk il++m+++gLt+ hvkSHLQ Niben101Scf00149g02005.1 23 KERLKWTQQLHDLFEKGVTQLGGPERATPKGILKVMGIEGLTIFHVKSHLQ 73 68************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.76E-14	20	76	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.305	20	80	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.6E-23	21	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.6E-21	23	75	IPR006447	Myb domain, plants
Pfam	PF00249	7.6E-8	25	75	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MPGKFKELLS SNMGSNRSDC SSKERLKWTQ QLHDLFEKGV TQLGGPERAT PKGILKVMGI 60 EGLTIFHVKS HLQVVLISLV IISFLIAYNF YL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-20	23	73	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-20	23	73	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-20	23	73	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-20	23	73	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009799173.1	1e-46	PREDICTED: protein PHR1-LIKE 1-like
Swissprot	Q9SJW0	2e-22	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A1U7Y7T1	3e-45	A0A1U7Y7T1_NICSY; protein PHR1-LIKE 1-like
TrEMBL	A0A314KT66	2e-45	A0A314KT66_NICAT; Myb family transcription factor phl7
STRING	XP_009799173.1	4e-46	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10101	20	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-21	G2-like family protein