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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Niben101Scf00152g18004.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | BBR-BPC | ||||||||
| Protein Properties | Length: 326aa MW: 36446.4 Da PI: 10.1206 | ||||||||
| Description | BBR-BPC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GAGA_bind | 379.7 | 4.7e-116 | 1 | 326 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye...pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverd 78
mdd+g+r+ r+k+ + + ++ +s+k q+m+++aerda+i+ernlalsekkaa+aerdma lqrd+a+aern+a++erd
Niben101Scf00152g18004.1 1 MDDSGHRDngRHKPpQGQwlmQHqPSMK-----QIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERD 80
999*998888888732222232234444.....**************************************************** PP
GAGA_bind 79 nkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekk 163
n++++l+++e s++ + +v+++ ++ ++++ +++p++++++++ r+++ +e+ p++ a+e ++ +++k rak+pk+ +
Niben101Scf00152g18004.1 81 NAIATLQYRESSISGGGQIARGVVKHMHHPQHVHVHHQPHMGEPTYNPRDMHVNESIPVSPVAPEPTKPRRNK---RAKEPKAMT 162
***********999888899999999999999999999********************988777666655555...555555544 PP
GAGA_bind 164 akkkkkksekskkkvkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGal 219
+kk+ k kkvk+e++d + sk ++k++dl+ln+v++De+t+PvPvCsCtGal
Niben101Scf00152g18004.1 163 GSKKTPKA---SKKVKRETEDLNqttfgksqewkgvqemgdasddlnrqlavSKPDWKDQDLGLNQVAFDETTMPVPVCSCTGAL 244
44333322...233333333311234566678999************************************************** PP
GAGA_bind 220 rqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
r CYkWGnGGWqS+CCtt++S+yPLP+++++r+aRi+grKmS++af+klL++LaaeG+dlsnpvDLk+hWAkHGtn+++ti+
Niben101Scf00152g18004.1 245 RPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKNHWAKHGTNRYITIK 326
*********************************************************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM01226 | 1.9E-163 | 1 | 326 | IPR010409 | GAGA-binding transcriptional activator |
| Pfam | PF06217 | 2.5E-106 | 1 | 326 | IPR010409 | GAGA-binding transcriptional activator |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009723 | Biological Process | response to ethylene | ||||
| GO:0005730 | Cellular Component | nucleolus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0042803 | Molecular Function | protein homodimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 326 aa Download sequence Send to blast |
MDDSGHRDNG RHKPPQGQWL MQHQPSMKQI MAIMAERDAA IQERNLALSE KKAALAERDM 60 AILQRDSAIA ERNNAIMERD NAIATLQYRE SSISGGGQIA RGVVKHMHHP QHVHVHHQPH 120 MGEPTYNPRD MHVNESIPVS PVAPEPTKPR RNKRAKEPKA MTGSKKTPKA SKKVKRETED 180 LNQTTFGKSQ EWKGVQEMGD ASDDLNRQLA VSKPDWKDQD LGLNQVAFDE TTMPVPVCSC 240 TGALRPCYKW GNGGWQSSCC TTNLSMYPLP AVPNKRHARI GGRKMSGSAF TKLLSRLAAE 300 GHDLSNPVDL KNHWAKHGTN RYITIK |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. | |||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00540 | DAP | Transfer from AT5G42520 | Download |
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| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | NP_001313105.1 | 0.0 | protein BASIC PENTACYSTEINE6-like | ||||
| Refseq | XP_009798749.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
| Refseq | XP_009798750.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
| Refseq | XP_009798751.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
| Refseq | XP_016451527.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
| Refseq | XP_016451528.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
| Refseq | XP_016451530.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
| Refseq | XP_016451531.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
| Refseq | XP_016509512.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
| Refseq | XP_016509513.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
| Refseq | XP_016509514.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
| Refseq | XP_016509515.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
| Refseq | XP_016509516.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
| Refseq | XP_018628854.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1 | ||||
| Refseq | XP_018628855.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2 | ||||
| Refseq | XP_018628856.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2 | ||||
| Refseq | XP_018628857.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2 | ||||
| Refseq | XP_019244940.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1 | ||||
| Refseq | XP_019244941.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1 | ||||
| Swissprot | Q8L999 | 1e-141 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
| TrEMBL | A0A076L2D6 | 0.0 | A0A076L2D6_TOBAC; GAGA-binding transcriptional activator | ||||
| TrEMBL | A0A1J6J273 | 0.0 | A0A1J6J273_NICAT; Protein basic pentacysteine6 | ||||
| TrEMBL | A0A1U7Y9Y3 | 0.0 | A0A1U7Y9Y3_NICSY; protein BASIC PENTACYSTEINE6-like | ||||
| STRING | XP_009798749.1 | 0.0 | (Nicotiana sylvestris) | ||||
| STRING | XP_009610156.1 | 0.0 | (Nicotiana tomentosiformis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA5353 | 23 | 38 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G42520.1 | 1e-127 | basic pentacysteine 6 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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