PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00156g03002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 257aa    MW: 29308.5 Da    PI: 10.2612
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00156g03002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-171461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT++Ed+ll ++v+++G g W++++ + g++R++k+c++rw++yl
  Niben101Scf00156g03002.1 14 KGAWTEQEDLLLRRCVEMYGEGKWHKVPIRAGLNRCRKSCRLRWLNYL 61
                              79********************************************97 PP
2Myb_DNA-binding45.32.1e-1467121148
                               TSSS-HHHHHHHHHHHHHTTTT........-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg........tWktIartmgkgRtlkqcksrwqkyl 48 
                               rg ++ +E +l+++++k+lG++        +W++Ia +++ gR+++++k++w+++l
  Niben101Scf00156g03002.1  67 RGDFSSDEIDLILRLHKLLGNRqvptrvtvSWSLIAGRLP-GRSANDVKNYWNTHL 121
                               899*************************************.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-22964IPR009057Homeodomain-like
PROSITE profilePS5129424.44965IPR017930Myb domain
SuperFamilySSF466891.94E-2411117IPR009057Homeodomain-like
SMARTSM007175.3E-151363IPR001005SANT/Myb domain
PfamPF002497.6E-171461IPR001005SANT/Myb domain
CDDcd001678.79E-111661No hitNo description
Gene3DG3DSA:1.10.10.603.6E-2065126IPR009057Homeodomain-like
PROSITE profilePS5129413.27266125IPR017930Myb domain
SMARTSM007171.5E-1066123IPR001005SANT/Myb domain
PfamPF002494.1E-1367121IPR001005SANT/Myb domain
CDDcd001671.86E-870121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MNTTTITKST GVRKGAWTEQ EDLLLRRCVE MYGEGKWHKV PIRAGLNRCR KSCRLRWLNY  60
LRPHIKRGDF SSDEIDLILR LHKLLGNRQV PTRVTVSWSL IAGRLPGRSA NDVKNYWNTH  120
LQRKLISLQR QDRKCRVLKI TENTIVRPRP RTFSSSKNVP NLCSNKSIRK TTNKEEGSKE  180
KNICEKPTGD APTDDGVRWW TSLLDNCNEI EEAAVVGSIN FQENNKLPSL LHEEISPPIN  240
GGSNCIQEVQ CGFGSST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-18141257108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240653.11e-155PREDICTED: transcription factor MYB113-like
RefseqXP_019240654.11e-155PREDICTED: transcription factor MYB113-like
SwissprotQ9FNV92e-59MY113_ARATH; Transcription factor MYB113
TrEMBLA0A1J6JSB41e-154A0A1J6JSB4_NICAT; Transcription factor myb90
STRINGXP_009626596.11e-150(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.18e-62myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]