PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00163g06003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 103aa    MW: 11084 Da    PI: 8.9583
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00163g06003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.44.6e-1345845291
                      FAR1 52 rrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                                 ++ +r+gCka+l vk++ +gkw +tk++++HnHel+p
  Niben101Scf00163g06003.1 45 PGANEFSRVGCKAHLIVKERASGKWAITKFVKDHNHELVP 84
                              5568889*******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-114484IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MHAESGLGLG SVLTDVHVAI TLSIAANWCV PKRALTLGLM NNTNPGANEF SRVGCKAHLI  60
VKERASGKWA ITKFVKDHNH ELVPLIKSTC FDHIVMSLVL PAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-12FAR1-related sequence 5