PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00163g06010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 602aa MW: 67483.7 Da PI: 8.0699

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00163g06010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	95.9	4.7e-30	62	150	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fYn+YA++vGF +r+s+ ++ +r+++i +r++vCskeg++ + +++ +k rr+r ++r+gCka+l+vkk+ +gkw +tk++++Hn Niben101Scf00163g06010.1 62 FYNSYARRVGFGTRVSAYRRARRDNTISSRQLVCSKEGFNPRPDER-HKPRRQRIVSRVGCKAHLTVKKQASGKWAITKFVKDHN 145 9*************************************999998.99******************************** PP FAR1 87 Helap 91 Hel+p Niben101Scf00163g06010.1 146 HELVP 150 *86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-27	62	150	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	11.226	285	317	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.0E-10	287	316	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.5E-9	292	319	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence Send to blast
MESQPLNLEN DAMEFHVGSG EEEEEDYKHI SSGLDSGDQC SSSNLEPYEG MEFESEQAAR 60 IFYNSYARRV GFGTRVSAYR RARRDNTISS RQLVCSKEGF NPRPDERHKP RRQRIVSRVG 120 CKAHLTVKKQ ASGKWAITKF VKDHNHELVP PDQVHLLRSH RHVSGPARSL IDTLQAAGLG 180 ATRVMSVLIK QSGGINNYEK ATASRHEKEV KVENDTINIA PILKTPSPME KQAANVYTRE 240 VFLMFQQELM ETLAYPATVI NDTGPDIVYQ VAKFGEDHKV HYVQYSVFEK KASCSCQLFD 300 SSGIPCKHIL AVFRVKNVLR LPSHYILKRW TRKAKREIVL DEDDLGLPSS HNESFTGRFE 360 KLSLEATKYV KEGVDSENAY QVAMAALREA SKNVAAAMCS TPAPPQCLDM NKAKKFNLNG 420 NQDDCRDSCL VSFTGRFEKL SLEATKYVKE GVDSENAYQV AMAALREASK NVAAAMCSTP 480 APPQCLDMNK AKKFNLNGNQ DDCRDSCLVV AHISALPWLL KPSDAAHHFS FPPSTLPANV 540 DRPILAHHSQ DEKIQELKTA VVNATEICEA YRAKLLSILS EMEEQKLRIS LKVQSMRLNQ 600 MT

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence Send to blast

MESQPLNLEN DAMEFHVGSG EEEEEDYKHI SSGLDSGDQC SSSNLEPYEG MEFESEQAAR  60
IFYNSYARRV GFGTRVSAYR RARRDNTISS RQLVCSKEGF NPRPDERHKP RRQRIVSRVG  120
CKAHLTVKKQ ASGKWAITKF VKDHNHELVP PDQVHLLRSH RHVSGPARSL IDTLQAAGLG  180
ATRVMSVLIK QSGGINNYEK ATASRHEKEV KVENDTINIA PILKTPSPME KQAANVYTRE  240
VFLMFQQELM ETLAYPATVI NDTGPDIVYQ VAKFGEDHKV HYVQYSVFEK KASCSCQLFD  300
SSGIPCKHIL AVFRVKNVLR LPSHYILKRW TRKAKREIVL DEDDLGLPSS HNESFTGRFE  360
KLSLEATKYV KEGVDSENAY QVAMAALREA SKNVAAAMCS TPAPPQCLDM NKAKKFNLNG  420
NQDDCRDSCL VSFTGRFEKL SLEATKYVKE GVDSENAYQV AMAALREASK NVAAAMCSTP  480
APPQCLDMNK AKKFNLNGNQ DDCRDSCLVV AHISALPWLL KPSDAAHHFS FPPSTLPANV  540
DRPILAHHSQ DEKIQELKTA VVNATEICEA YRAKLLSILS EMEEQKLRIS LKVQSMRLNQ  600
MT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009591935.1	1e-149	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_009591996.1	1e-149	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1S3ZJB9	1e-148	A0A1S3ZJB9_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009591935.1	1e-149	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-63	FAR1-related sequence 5