PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00167g00008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 261aa    MW: 29922.5 Da    PI: 5.8635
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00167g00008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.23.8e-131461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg+WT +Ed +l++ +   G  +Wk +++  g+ R++k+c++rw +yl
  Niben101Scf00167g00008.1 14 RGPWTIDEDHKLLNFILNNGIQCWKMVPKFAGLLRCGKSCRLRWINYL 61
                              89******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-19564IPR009057Homeodomain-like
PROSITE profilePS5129420.042965IPR017930Myb domain
SuperFamilySSF466891.18E-181196IPR009057Homeodomain-like
SMARTSM007173.1E-61363IPR001005SANT/Myb domain
PfamPF002498.7E-111461IPR001005SANT/Myb domain
CDDcd001674.15E-51661No hitNo description
PROSITE profilePS500904.4496297IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.9E-865104IPR009057Homeodomain-like
SMARTSM00717166102IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGRQPCSDKV GLKRGPWTID EDHKLLNFIL NNGIQCWKMV PKFAGLLRCG KSCRLRWINY  60
LRPDLKREPL SEAEESQIIQ LHASFGRTDN EIKNHWNTRI KKRLKLLGID PLTHNPFEPI  120
NLKQKPDETI IQANMPTHDH VTENSSTSSE TKKTETDLKV DDITNDFLVV ENEYSNLCGN  180
LDVDLLDNST KTMSYSLETA ESIKFSSASV ATESSSNVVP AEGQDSIQQW FYSVDSLFSW  240
DNNVKQHGVG EDFSYWRNYN H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-16121045108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009596112.11e-170PREDICTED: myb-related protein 315-like
SwissprotP813942e-62MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A1S4CFB61e-167A0A1S4CFB6_TOBAC; myb-related protein 315-like
STRINGXP_009596112.11e-169(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-63myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]