PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00176g00013.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 202aa MW: 22926.2 Da PI: 5.0675

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00176g00013.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.1	8.6e-05	40	79	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +ErrRR+++ +++ eLr+l+ k +i + A+ YI++Lq Niben101Scf00176g00013.1 40 NLDAERRRRQKLSERLLELRSLMTKE-----------TIITDAITYIRELQ 79 5579*******************998...........89999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.55E-7	34	82	No hit	No description
SuperFamily	SSF47459	7.46E-10	35	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-7	36	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-5	41	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MEFPNSPFDD SNISEGSKIG GKMDKRKQIE GEVREYKSKN LDAERRRRQK LSERLLELRS 60 LMTKETIITD AITYIRELQT NVNNLSEQLL EMEATNGEEL ETKSEENIVT AEEMANWGIE 120 PEVQVAHIGT SKLWIRIICR KKRGGFTKVM EAMNILGFDL NDTSVTASKG AFLVTSTVEV 180 VRGGLIDAHQ IREILLEIIR GI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009773859.1	1e-133	PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1-like isoform X1
TrEMBL	A0A314KXI0	1e-134	A0A314KXI0_NICAT; Transcription factor dyt1
STRING	XP_009773859.1	1e-133	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9107	16	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21330.1	4e-29	bHLH family protein