PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00182g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 238aa MW: 26750.2 Da PI: 6.6307

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00182g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.2	1.5e-08	71	104	1	37
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskK 37 ++ +hn+ Er RR++ Ns + Lr+llP +++K Niben101Scf00182g00001.1 71 KKLNHNASERDRRKKFNSLCSSLRSLLPAT---DHTK 104 6789************************97...6666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.41E-7	62	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.566	70	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-7	71	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-6	71	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MAVSSPLFSN FDVCLADPKS CEQNTIEAPV SLGINNIPVH YSSSQPSIVH SEFKNFDKIN 60 GDNDHLDGNV KKLNHNASER DRRKKFNSLC SSLRSLLPAT DHTKEVERLR QKKEDLTLRS 120 FPKKEYSADF NKQTMISGGI QSSLSVISVN QVGNREVIIH ISTLKINKSS FAEAVSELEE 180 DGLLLLNASS FETLGDKVFY NLHFQAKGTL PINVQILRDK LLSYYEKEDN SLNLVYEV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019263244.1	1e-137	PREDICTED: transcription factor ORG2-like
TrEMBL	A0A1S3ZNR3	1e-120	A0A1S3ZNR3_TOBAC; transcription factor bHLH100-like isoform X1
TrEMBL	A0A1U7W795	1e-120	A0A1U7W795_NICSY; transcription factor bHLH100-like isoform X1
STRING	XP_009616456.1	1e-121	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2226	22	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	3e-35	bHLH family protein