PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00187g02027.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 357aa MW: 40065.5 Da PI: 5.6241

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00187g02027.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.9	1.2e-10	282	322	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L++l+P+ +K++ +++Le+Av+Y+k Lq Niben101Scf00187g02027.1 282 RKRRERINERLRILQSLVPNG-----TKVEISTMLEEAVQYVKFLQ 322 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.034	272	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.19E-13	272	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.5E-12	277	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-10	278	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.87E-11	281	326	No hit	No description
Pfam	PF00010	6.9E-8	282	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MLSEGEWSSL SGICSTEEAD FMAQLFGNCP NDQLPSSFNI RLPNFWTSHD QPSLNVGGLS 60 NQVPVYNSSD ETNNSMYVFS QESTDNSGGS GIHFPHFHAT LLTNNSVEDK MSYPSHQVPP 120 NNVIEAVAID FLNKEVCNES MESDENMPES DLHGKVLQLR REYDQMQVRE QDHKMDSSSE 180 SSKKRGRLPA HNVPKSKRSV KPKKNMTSIA DDEIGNKENK SNVLHRHSSF SCCSEDESNV 240 SNYELYGLAS SDNSKEVVPV KSNGKSRASR GSATDPQSLY ARKRRERINE RLRILQSLVP 300 NGTKVEISTM LEEAVQYVKF LQLQIKLLSS DDLWMYSPIA YNRMDLGLDL KIGTPNS

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MLSEGEWSSL SGICSTEEAD FMAQLFGNCP NDQLPSSFNI RLPNFWTSHD QPSLNVGGLS  60
NQVPVYNSSD ETNNSMYVFS QESTDNSGGS GIHFPHFHAT LLTNNSVEDK MSYPSHQVPP  120
NNVIEAVAID FLNKEVCNES MESDENMPES DLHGKVLQLR REYDQMQVRE QDHKMDSSSE  180
SSKKRGRLPA HNVPKSKRSV KPKKNMTSIA DDEIGNKENK SNVLHRHSSF SCCSEDESNV  240
SNYELYGLAS SDNSKEVVPV KSNGKSRASR GSATDPQSLY ARKRRERINE RLRILQSLVP  300
NGTKVEISTM LEEAVQYVKF LQLQIKLLSS DDLWMYSPIA YNRMDLGLDL KIGTPNS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019264160.1	0.0	PREDICTED: transcription factor bHLH84
TrEMBL	A0A1J6JNX6	0.0	A0A1J6JNX6_NICAT; Transcription factor bhlh84
STRING	XP_009598406.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA639	22	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	8e-50	bHLH family protein