PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00192g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 207aa MW: 23429.6 Da PI: 8.5471

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00192g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	110.9	9.5e-35	11	105	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 aCa+Ck++r+kCa+ C+lapyfpae++k+f++vhk+FG+snv kl+k+l ee+r++a++slv+eA +r++dPv G++g ++++ + Niben101Scf00192g00001.1 11 ACASCKHQRKKCANTCILAPYFPAEKSKEFQAVHKIFGVSNVAKLIKTLIEEDRKKAADSLVWEAFCRQKDPVLGSYGEYRRVIE 95 7**********************************************************************************99 PP DUF260 86 qleqlkaela 95 +l+ k++ + Niben101Scf00192g00001.1 96 ELKLYKSQHQ 105 9999888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.603	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.8E-33	11	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MQKINSRDTA ACASCKHQRK KCANTCILAP YFPAEKSKEF QAVHKIFGVS NVAKLIKTLI 60 EEDRKKAADS LVWEAFCRQK DPVLGSYGEY RRVIEELKLY KSQHQQILQM PSQGATGLMY 120 NAAEGRNNGY NNTKANYMME FCPCSNNIHL QHVQNNMEKL TSDSNGYTII VPQQAIDGFT 180 NHYYLTAGSC SPIDVKRMEN SLWEASS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-21	10	109	10	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-21	10	109	10	113	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00128	DAP	Transfer from AT1G06280	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009790364.1	1e-134	PREDICTED: LOB domain-containing protein 27-like
Refseq	XP_016466095.1	1e-134	PREDICTED: LOB domain-containing protein 27-like
TrEMBL	A0A1S3ZNI0	1e-133	A0A1S3ZNI0_TOBAC; LOB domain-containing protein 27-like
TrEMBL	A0A1U7XTY2	1e-133	A0A1U7XTY2_NICSY; LOB domain-containing protein 27-like
STRING	XP_009790364.1	1e-134	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10177	18	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	2e-51	LOB domain-containing protein 2