PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00193g01009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 549aa    MW: 63621.3 Da    PI: 9.1238
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00193g01009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.45.8e-53101351128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrFhPtdeel+++yL+++++++++++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfF++rd+ky++g r+nra+ sgyWka
  Niben101Scf00193g01009.1  10 LPPGFRFHPTDEELIMYYLRNQATSRRCPI-SIIPEVDVYKFDPWELPEKAEFGEREWYFFTPRDRKYPNGVRPNRAAISGYWKA 93 
                               79****************************.89***************99999******************************** PP

                       NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tg+dk+++s +++ vg+kk Lvfykgr pkg ktdW+mheyrl
  Niben101Scf00193g01009.1  94 TGTDKAIYS-GSKYVGIKKALVFYKGRPPKGIKTDWIMHEYRL 135
                               *********.999****************************98 PP
2NAM170.45.8e-532764011128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrFhPtdeel+++yL+++++++++++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfF++rd+ky++g r+nra+ sgyWka
  Niben101Scf00193g01009.1 276 LPPGFRFHPTDEELIMYYLRNQATSRRCPI-SIIPEVDVYKFDPWELPEKAEFGEREWYFFTPRDRKYPNGVRPNRAAISGYWKA 359
                               79****************************.89***************99999******************************** PP

                       NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tg+dk+++s +++ vg+kk Lvfykgr pkg ktdW+mheyrl
  Niben101Scf00193g01009.1 360 TGTDKAIYS-GSKYVGIKKALVFYKGRPPKGIKTDWIMHEYRL 401
                               *********.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.18E-647162IPR003441NAC domain
PROSITE profilePS5100561.02510162IPR003441NAC domain
PfamPF023658.3E-2611135IPR003441NAC domain
SuperFamilySSF1019411.96E-64273428IPR003441NAC domain
PROSITE profilePS5100561.025276428IPR003441NAC domain
PfamPF023658.3E-26277401IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MVGKNNSQQL PPGFRFHPTD EELIMYYLRN QATSRRCPIS IIPEVDVYKF DPWELPEKAE  60
FGEREWYFFT PRDRKYPNGV RPNRAAISGY WKATGTDKAI YSGSKYVGIK KALVFYKGRP  120
PKGIKTDWIM HEYRLSESRS QPIRPNGSMR LDDWVLCRIY KKKNLGRAME MMNVEEETQQ  180
PKILNTNPVE IVAATGPQTL KLPRTCSLSH LLEMDYLGSI SQLFDDNSYN ANNQNTMTNI  240
NTGNVSHHAM EKFQLEEFSH QYMTSTNVNG NVPIFLPPGF RFHPTDEELI MYYLRNQATS  300
RRCPISIIPE VDVYKFDPWE LPEKAEFGER EWYFFTPRDR KYPNGVRPNR AAISGYWKAT  360
GTDKAIYSGS KYVGIKKALV FYKGRPPKGI KTDWIMHEYR LSESRSQPIR PNGSMRLDDW  420
VLCRIYKKKN LGRAMEMMNV EEETQQPKIL NTNPVEIVAA TGPQTLKLPR TCSLSHLLEM  480
DYLGSISQLF DDNSYNANNQ NTMTNINTGN VSHHAMEKFQ LEEFSHQYMT STNVNGNVPI  540
FVNPAFQFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-701043015170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598866.10.0PREDICTED: NAC transcription factor 29-like
SwissprotK4BNG71e-158NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLA0A1S4BTM30.0A0A1S4BTM3_TOBAC; NAC transcription factor 29-like
STRINGXP_009598866.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74624103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-108NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]