PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00199g05004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 785aa MW: 85632.6 Da PI: 6.3302

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00199g05004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	365.8	6e-112	421	766	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 +lLl+cAea+s+++le+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y+alp ++ + +++ ++a+++f+ Niben101Scf00199g05004.1 421 LTLLLQCAEAISADNLEEANKMLLEVSELSTPFGTSAQRVAAYFSEAISARLLNSCLGIYAALPITNVPVLYTQKMASAFQVFNG 505 579****************************************************************999********* PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAee 171 +sP++kfsh+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g s ++le+tg+rL++fAe+ Niben101Scf00199g05004.1 506 ISPFIKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGT----SMDALEATGKRLSDFAER 586 ***********************************************************....************** PP GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 lg+pfef + va+++ +l++e+L+v+++Ea+aV++ h+l+d ++s ++ +L+l++s ++sFl r Niben101Scf00199g05004.1 587 LGLPFEFLP-VADKVGNLDPEKLNVSKREAVAVHWLQ--HSLYDVTGSDSN----TLSLLQS---------------HAGSFLGR 649 *****.7*********************9..999999999988....8988875...............4789 PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341 f+ea++yysalfdsl a +++eseer++vE++ll++ei+nv+a g +r + + +++Wre+l+++GF++++l +aa+qa lll Niben101Scf00199g05004.1 650 FVEAIHYYSALFDSLGACYGEESEERHVVEQQLLSKEIRNVLAVGGPSRSGEVK-FNNWREKLQQSGFRSISLAGNAAAQATLLL 733 ********************************************888776.************************** PP GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++s+gy++ e++g+l lgWkd L+++SaWr Niben101Scf00199g05004.1 734 GMFPSHGYTLVEDNGTLKLGWKDLCLFTASAWR 766 ******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	52.288	394	746	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.1E-109	421	766	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 785 aa Download sequence Send to blast
MAKSLPLNGD NCGNTSANVG GSSDKDNSSK MVRKRAASDM EIQTGAGEEN RYHRRPVTIG 60 GSHSHLGDLS ACGTSNLRHV SNYSTMQMLP SSTNVCGVTS KGADFTGFSN SFPNLINYSD 120 QQQNLNNNNQ SPSVCVFSGL PLFPPDRNRQ NGGVLLQQQP TTAAAVLASP LTTTVASMEE 180 SATSATAWID GIIKDLINSS AQVSVPQLIQ NVREIIHPCN PYLASLLEYR LRSLTSNNNT 240 NNNSGHSGDV HNDAAAAMEF WRRKEGVLPQ LASLQQGQNM NPNSLQQHNI LSLPDSSNNH 300 YLNWDIAAPV APSLNHHQQI SSNNNPTVTA DLSFVTSAPI LPPPLQQQQQ QQESSHSQQQ 360 AAVDLEQQKQ QQSSSTSLSP TSATDCGKTK TTTPVVPVNT YREKKEEERQ QKRDEDGLHL 420 LTLLLQCAEA ISADNLEEAN KMLLEVSELS TPFGTSAQRV AAYFSEAISA RLLNSCLGIY 480 AALPITNVPV LYTQKMASAF QVFNGISPFI KFSHFTANQA IQEAFEREDR VHIIDLDIMQ 540 GLQWPGLFHI LASRPGGPPF VRLTGLGTSM DALEATGKRL SDFAERLGLP FEFLPVADKV 600 GNLDPEKLNV SKREAVAVHW LQHSLYDVTG SDSNTLSLLQ SHAGSFLGRF VEAIHYYSAL 660 FDSLGACYGE ESEERHVVEQ QLLSKEIRNV LAVGGPSRSG EVKFNNWREK LQQSGFRSIS 720 LAGNAAAQAT LLLGMFPSHG YTLVEDNGTL KLGWKDLCLF TASAWRPNSF HTSPGSRQFS 780 RPNMD

Sequence ? help Back to Top

Protein Sequence Length: 785 aa Download sequence Send to blast

MAKSLPLNGD NCGNTSANVG GSSDKDNSSK MVRKRAASDM EIQTGAGEEN RYHRRPVTIG  60
GSHSHLGDLS ACGTSNLRHV SNYSTMQMLP SSTNVCGVTS KGADFTGFSN SFPNLINYSD  120
QQQNLNNNNQ SPSVCVFSGL PLFPPDRNRQ NGGVLLQQQP TTAAAVLASP LTTTVASMEE  180
SATSATAWID GIIKDLINSS AQVSVPQLIQ NVREIIHPCN PYLASLLEYR LRSLTSNNNT  240
NNNSGHSGDV HNDAAAAMEF WRRKEGVLPQ LASLQQGQNM NPNSLQQHNI LSLPDSSNNH  300
YLNWDIAAPV APSLNHHQQI SSNNNPTVTA DLSFVTSAPI LPPPLQQQQQ QQESSHSQQQ  360
AAVDLEQQKQ QQSSSTSLSP TSATDCGKTK TTTPVVPVNT YREKKEEERQ QKRDEDGLHL  420
LTLLLQCAEA ISADNLEEAN KMLLEVSELS TPFGTSAQRV AAYFSEAISA RLLNSCLGIY  480
AALPITNVPV LYTQKMASAF QVFNGISPFI KFSHFTANQA IQEAFEREDR VHIIDLDIMQ  540
GLQWPGLFHI LASRPGGPPF VRLTGLGTSM DALEATGKRL SDFAERLGLP FEFLPVADKV  600
GNLDPEKLNV SKREAVAVHW LQHSLYDVTG SDSNTLSLLQ SHAGSFLGRF VEAIHYYSAL  660
FDSLGACYGE ESEERHVVEQ QLLSKEIRNV LAVGGPSRSG EVKFNNWREK LQQSGFRSIS  720
LAGNAAAQAT LLLGMFPSHG YTLVEDNGTL KLGWKDLCLF TASAWRPNSF HTSPGSRQFS  780
RPNMD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	0.0	404	769	3	382	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269\|PubMed:16339910}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019235274.1	0.0	PREDICTED: protein SCARECROW-like
Swissprot	Q2Z2E9	0.0	SCR_IPONI; Protein SCARECROW
TrEMBL	A0A1J6L4W6	0.0	A0A1J6L4W6_NICAT; Protein scarecrow
STRING	XP_009615228.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8258	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	0.0	GRAS family protein