PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00217g02002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 232aa MW: 26677.4 Da PI: 10.1992

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00217g02002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.9	4.7e-20	66	151	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +Y+eYA ++GF +r+ +s+ks+r+g+i++r + C ++++ + ++++r r gC+a++ vk+ek g w+v k++ +Hn Niben101Scf00217g02002.1 66 YYDEYAGRAGFITRVLSSRKSERDGSIISRGLGCRGIPDNQRSG---SIANQKRDRRRDGCTAMILVKREKPGMWVVRKFVRDHN 147 8*******************************7555555544...4588999999************************ PP FAR1 87 Hela 90 H+l+ Niben101Scf00217g02002.1 148 HPLV 151 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.7E-18	66	151	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MMTKNLPTEG SLICLFISVD VQISEDNGAR RLETSEIGQV STSEADRTQE PYEGMPFESE 60 EAARAYYDEY AGRAGFITRV LSSRKSERDG SIISRGLGCR GIPDNQRSGS IANQKRDRRR 120 DGCTAMILVK REKPGMWVVR KFVRDHNHPL VISPSKRRPT FDEKDKKIQE LTAELRIKKR 180 LSAAYREQLL SLMKDVDSHR EHMSTKVQAV RRILKELEAK RQELSNHSKH YK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009764129.1	1e-156	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
Refseq	XP_009764130.1	1e-156	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
Refseq	XP_009764131.1	1e-156	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
TrEMBL	A0A1U7VGV5	1e-155	A0A1U7VGV5_NICSY; protein FAR1-RELATED SEQUENCE 2-like
STRING	XP_009764129.1	1e-155	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13099	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-45	FAR1 family protein